|
|
Seminars Spring 2016
06/03/16 |
| Simple neural networks cont.
Presented by Xiu Zhang and Rajkumar Theagarajan
| | |
05/27/16 |
| Simple neural networks
Presented by Xiu Zhang and Rajkumar Theagarajan
| | |
05/20/16 |
| Data Mining with Weka: Attribute selection using the "wrapper" method.
Presented by Giovanna Pozuelos and Asong Tambo
| | |
05/13/16 |
| More Data Mining with Weka, Class 3 cont.
Presented by Vincent On and Atena Zahedi
| | |
05/06/16 |
| More Data Mining with Weka, Class 3 cont.
Presented by Vincent On and Atena Zahedi
| | |
04/29/16 |
| More Data Mining with Weka, Class 3
Presented by Vincent On and Atena Zahedi
| | |
04/22/16 |
| More Data Mining with Weka, Class 2
Presented by Adam Witmer and Belinda Le
| | |
04/15/16 |
| Data Mining with Weka, Class 1 More Data Mining with Weka, Class 2
Presented by Careen Khachatoorian and Reed Harrison
Presented by Adam Witmer and Belinda Le
| | |
04/08/16 |
| Data Mining with Weka, Class 1
Presented by Careen Khachatoorian and Reed Harrison
| | |
04/01/16 |
| Class Meeting
Presented by Bir Bhanu
| | |
Seminars Winter 2016
01/08/16 |
| Class Meeting
Presented by Bir Bhanu
| | |
01/15/16 |
| Introduction to Data Mining with Weka: Part 1
Presented by Xiu Zhang
| | |
01/22/16 |
| Introduction to Data Mining with Weka: Part 2
Presented by Xiu Zhang
| | |
01/29/16 |
| WEKA Ch.2: Testing, Training, and Evaluation: Part 1
Presented by Adam Witmer and Belinda Le
| | |
02/05/16 |
| WEKA Ch.2: Testing, Training, and Evaluation: Part 2
Presented by Adam Witmer and Belinda Le
| | |
02/12/16 |
| Data Mining with Weka
Presented by Careen Khachatoorian and Asong Tambo
| | |
02/19/16 |
| Data Mining with Weka
Presented by Vincent On and Atena Zahedi
| | |
02/26/16 |
| Data Mining with Weka
Presented by Vincent On and Atena Zahedi
Data Mining in Weka: Chapter 5, Putting it all together
Presented by Giovanna Pozuelos and Reed Harrison
| | |
03/04/16 |
| Data Mining in Weka: Chapter 5, Putting it all together
Presented by Giovanna Pozuelos and Reed Harrison
| | |
03/11/16 |
| Machine Learning and Bioinformatics Presentation
Presented by Bir Bhanu
| | |
Seminars Fall 2015
10/02/2015 |
| Stem Cell Research: Where are we now?
Presented by Giovanna Pozuelos
| | |
10/09/2015 |
| Rethinking Differentiation: Stem Cells, Regeneration, and Plasticity
Presented by Belinda Le
| | |
10/16/2015 |
| Live cell imaging distinguishes bona fide human iPS cells from partially reprogrammed cells
Presented by Harrison Reed
| | |
10/23/2015 |
| Human Neural Stem Cell Growth and Differentiation in a Gradient-Generating Microfluidic Device.
Presented by Adam Witmer
| | |
10/30/2015 |
| StemCellQC: A Smart-Detection Multiplexing Toolkit for Evaluation of Cellular Processes, Quality, and Biomarkers of Harm
Presented by Vincent On
| | |
11/06/2015 |
| Dynamic Bi-Modal Fusion of Images for the Segmentation of Pollen Tubes in Video
Presented by Asong Tambo
| | |
11/13/2015 |
| Dynamic and Social Behaviors of Human Pluripotent Stem Cells
Presented by Careen Khachatoorian
| | |
11/20/2015 |
| Time-Lapse Analysis of Human Embryonic Stem Cells Reveals Multiple Bottlenecks Restricting Colony Formation and Their Relief upon Culture Adaptation
Presented by Giovanna Pozuelos
| | |
12/04/2015 |
| In Vivo Time-Lapse Imaging of Cell Divisions During Neurogenesis in the Developing Zebrafish Retina.
Presented by Vincent On
| | |
Seminars Spring 2015
4/10/2015 |
| Review: “Unifying Immunology with Informatics and Multiscale Biology”
Presented By Reed Harrison
| | |
|
4/17/2015 |
| Quantitative High Content Imaging of Cellular Adaptive Stress Response Pathways in Toxicity for Chemical Safety Assessment
Presented By Atena Zahedi
| | |
|
4/24/2015 |
| Facial Expression Recognition
Presented By Belinda Le
| | |
|
5/1/2015 |
| "Multiscale Computational Models of Complex Biological Systems" by Walpole et al
Presented By Melissa Eberle and Carissa Rodriguez
| | |
|
5/8/2015 |
| “Multi-Scale Modeling in Cell Biology”
Presented By Careen Khachatoorian
| | |
|
5/22/2015 |
| Structural Systems Biology and Multiscale Signaling Models
Presented By Jillian Larsen and Erica Freeman
| | |
|
5/29/2015 |
| A Survey on Cloud Computing
Presented By Katya Mkrtchyan
| | |
|
6/5/2015 |
| "Multiscale Models of Cell Signaling" by S. Bajikar and K. Janes.
Presented by Vincent On and Asong Tambo
| | |
|
Seminars Winter 2015
1/16/2015 |
| An Overview of Cellular Reprogramming
Presented by Sabrina Lin
| | |
|
1/23/2015 |
| Computational Image Analysis of Colony and Nuclear Morphology to Evaluate Human iPSCs
Presented by Atena Zahedi
| | |
|
1/30/2015 |
| Cellular Alchemy and the Golden Age of Reprogramming
Presented by Careen Khachatoorian
| | |
|
2/06/2015 |
| The Role of Transcription Factors for Inducing Pluripotent Stem Cells.
Presented by Erica Freeman
| | |
|
2/13/2015 |
| Modulating Immune Response for Efficient Induction of Pluripotency
Presented by Reed Harrison
| | |
|
2/20/2015 |
| "Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors"
Presented by Carissa Rodriguez
| | |
|
2/27/2015 |
| "Concise Review: Induced Pluripotent Stem Cells Versus Embryonic Stem Cells: Close Enough or Yet Too Far Apart?" by Bilic and Belmonte
Presented by Vincent On
| | |
|
3/6/2015 |
| "Review: Directing Cell Fate for Regenerative Medicine"
Presented by Belinda Le
| | |
|
3/13/2015 |
| Using Cellular Reprogramming In Vivo to Regenerate Functional Neurons in Injury and Alzheimer’s Disease Models
Presented by Brett Bays
| | |
|
Seminars Fall 2014
10/03/2014 |
| Computational Methods for Mild Traumatic Brain Injury
Presented by Anthony Bianchi
| | |
|
10/17/2014 |
| Integrated Model for Understanding Pollen Tube Growth in Video
Presented by Asong Tambo
| | |
10/24/2014 |
| The Colored Revolution: An Introduction to Fluorescence Microscopy
Presented by Jillian Larson
| | |
|
11/7/2014 |
| Informatics Challenges of High-Throughput Microscopy by Zhou and Wong
Presented by Reed Harrison
| | |
|
11/14/2014 |
| Tracking in Molecular Bioimaging
Presented by Careen Khachatoorian
| | |
|
11/21/2014 |
| Understanding the Mechanisms of Cell Migration and Morphology
Presented by Atena Zahedi
| | |
|
12/05/2014 |
| Image Processing and 3D Reconstruction in Electron Microscopy
Presented by Belinda Tran Le
| | |
|
12/12/2014 |
| Dynamic Migration and Cell-Cell Interactions of Early Reprogramming Revealed by High-Resolution Time-Lapse Imaging, by Cynthia M Megyola
Presented by Vincent On
| | |
|
Seminars Spring 2014
6/6/2014 |
| Cell Segmentation: Quantitative High-speed Imaging Of Entire Developing Embryos With Simultaneous Multiview Light-sheet Microscopy
Presented by Erica Freeman
| | |
|
5/30/2014 |
| FIJI Is Really ImageJ
Presented by Albert Cruz
| | |
|
5/23/2014 |
| Faster STORM Using Compressed Sensing
Presented by Asong Tambo
| | |
|
5/16/2014 |
| Cell Segmentation: 50 Years Down the Road
Presented by Benjamin Guan
| | |
|
5/09/2014 |
| Brain Programming for the Evolution of an Artificial Dorsal Stream
Presented by Gustavo Olague, Ph.D.
| | |
|
5/02/2014 |
| Icy: An Open Bioimage Informatics Platform For Extended Reproducible Research
Presented by Nolan Ung
| | |
|
4/25/2014 |
| An Image Analysis Toolbox For High-throughput C. Elegans Assays
Presented by Stephanie Coffman
| | |
|
4/18/2014 |
| Current Biological Software Tools
Presented by Jillian Larsen
| | |
|
4/11/2014 |
| Video Bioinformatics
Presented by Bir Bhanu, Ph.D.
| | | |
Seminars Winter 2013
3/14/2014 |
| Identification Of Genes Required For RNAi-mediated Antiviral Immunity In The Animal Model, C. Elegans
Presented by Stephanie Coffman
| | | |
3/07/2014 |
| Dipole Modulated Charge Transfer And Tools For Experimental Molecular Mechanics
Presented by Jillian Larsen
| | | |
2/28/2014 |
| Video of Bioinformatics Databases
Presented by Ninad Thakoor, Ph.D.
| | |
|
2/21/2014 |
| "Quest For The Early Crest." Origin Of Neural Crest From Birds To Humans
Presented by Martin Garcia-Castro, Ph.D.
| | |
|
2/14/2014 |
| Repeated Mild Traumatic Brain Injury Results In Long Term White Matter Disruption
Presented by Virginia Donovan
| | |
|
2/07/2014 |
| Drosophila Taste Receptors Reveal Combinatorial And Cross-modality Functions
Presented by Erica Freeman
| | |
|
1/31/2014 |
| Workshop on Adobe Premiere and Science Video Documentaries
Presented by Albert Cruz
| | |
|
1/24/2014 |
| IGERT Poster Competition 2014 Stage 2
Presented by Brett Bays, Carissa Reynolds, and Asong Tambo
| | |
|
1/17/2014 |
| Spatio-temporal Patterns Of Alpha Band EEG Activity In A Perceptual Learning Paradigm: An In-progress Analysis
Presented by Brett Bays
| | |
|
Seminars Fall 2013
Seminars Spring 2013
Seminars Winter 2013
Seminars Fall 2012
Seminars Spring 2012
Seminars Winter 2012
Date |
Title |
Presenter |
Papers |
03/16/2012 |
Finding and winning research funding |
Mitch Boretz |
|
03/09/2012 |
Information Geometry and its Applications to Computer Vision and Medical Image Analysis |
Bab C. Vemuri |
Abstract
Total Bregman Divergence and
Its Applications to DTI Analysis
|
03/02/2012 |
Biomechanical Challenges in Abusive Head Trauma |
Mark Massi |
Abstract
|
02/24/2012 |
IGERT on Video Bioinformatics Poster Competition Stage 2 |
IGERT Fellows |
Abstract
|
02/17/2012 |
Quantitative Live-Cell Imaging: Increasing the possibilities with Cell-IQ |
JoAnne Montalbano |
Abstract
Bibliography
|
02/10/2012 |
IGERT on Video Bioinformatics Poster Competition Information |
Bir Bhanu |
|
02/03/2012 |
Molecular Basis of Tumor Heterogeneity and Morphometric subtypes in Glioblastoma Multiforme
(GBM)
|
Bahram Parvin |
Morphometic Analysis of
TCGA Glioblastoma Multiforme
Nuclear Segmentation in H&E Sections via
Multi-Reference Graph Cut(MRGC)
|
01/27/2012 |
IGERT on Video Bioinformatics Internships |
Bir Bhanu |
|
01/20/2012 |
A Fast, Automatic Computational Method for Injury Detection in T2 MRI Images Using a
Symmetry-Based Algorithm |
Devin McBride |
|
01/13/2012 |
Data Sampling for Live Biological Processes |
Albert Cruz |
|
Seminars Fall 2011
Date |
Title |
Presenter |
Papers |
12/02/2011 |
High-Throughput Biology Approaches for Profiling Cellular Processes |
Thomas Girke |
|
11/18/2011 |
Dynamic Health Index Derived from Morphological Changes used to Screen Chemicals for Toxicity in Stem Cell Colony Growth |
Douglas Hill |
|
11/04/2011 |
Estimation of Cell Lineages in Confocal Microscopy Images of A Developing Plant Meristem |
Katya Mkrtchyan |
|
10/21/2011 |
Understanding Discrete Facial Expression in Video Using Emotion Avatar Image |
Songfan Yang |
|
10/14/2011 |
A Psychologically-Inspired Match-Score Fusion Model for Video-Based Facial Expression Recognition |
Albert Cruz |
|
10/07/2011 |
Antiviral immunity and virus discovery by deep sequencing and computational algorithms |
Shou-Wei Ding |
|
09/30/2011 |
Non-Dynamic Blebbing single unattached human embryonic stem cell detection in the complex cell clusters |
Ben Guan |
|
Seminars Spring 2011
Date |
Title |
Presenter |
Papers |
06/03/2011 |
Research Ethics Workshop: Session 2 |
Dr. Charles F Louis |
|
05/27/2011 |
Biologically-inspired Bacterial Foraging for Tracking |
Hoang Nguyen |
|
05/20/2011 |
Utilization of Bioluminescence Resonance Energy Transfer (BRET) to monitor B-arrestin interactions in living cells |
Dr. Kathryn DeFea |
|
05/13/2011 |
Discussion of IGERT on Video Bioinformatics Program |
Dr. Bir Bhanu |
|
05/06/2011 |
Research Ethics Workshop: Session 1 |
Dr. Charles F Louis |
|
04/29/2011 |
Finding and Winning Research Funding |
Mitch Boretz |
|
04/22/2011 |
Automated injury detection from Brain MRI |
Dr. Nirmalya Ghosh |
|
04/15/2011 |
Self-Assembled Nano-Materials for Optical Imaging and Phototherapy |
Dr. Bahman Anvari |
|
04/8/2011 |
An introduction to Temporal Databases and Indexing |
Dr. Vassilis Tsotras |
|
04/1/2011 |
Overview of the MPEG Reconfigurable Video Coding Initiative |
Dr. Philip Brisk |
|
Seminars Winter 2011
Date |
Title |
Presenter |
Papers |
03/11/2011 |
To eat or not to eat: Analysis of receptors and neurons that guide feeding behavior decisions |
Dr. Anupama Dahanukar |
|
03/04/2011 |
Quantitative Cellular Imaging Analysis |
William "Ned" Jastromb |
|
02/25/2011 |
Study of pollen tube morphogenesis using mathematical and experimental approaches |
Dr. An Yan |
|
02/18/2011 |
Tuning PLGA Microparticles for Single-Shot Vaccines: Transient Evaluation using TEM |
Dr. Victor Rodgers |
|
02/11/2011 |
Polarity Establishment in Yeast |
Dr. Daniel Lew |
|
02/04/2011 |
Image Based Growth Modeling In Plant Meristems |
Dr. Amit Roy-Chowdhury |
|
01/28/2011 |
IGERT Students Poster Competition |
Anthony Bianchi
Ben Guan |
- Characterization of Human Embryonic Stem Cell Differentiation into Osteoblasts
|
01/21/2011 |
Microfluidics Made Easy |
Dr. Valentine Vullev |
|
01/14/2011 |
Natural Material Design: Engineering Materials that Work |
Dr. Julia Lyubovitsky |
|
Seminars Fall 2010
Date |
Title |
Presenter |
Papers |
12/03/2010 |
Analysis of static and moving images to quantify calcification of osteoblasts in culture |
Dr. Nicole I. zur Nieden |
|
11/19/2010 |
Advances in Optical Coherence Tomography |
Dr. Hyle Park |
|
11/12/2010 |
High-throughput genomics and signal transduction in filamentous fungi |
Dr. Katherine Borkovich |
|
11/05/2010 |
Harm Reduction Cigarettes: Accessing its effects on early development using embryonic stem cell based assays |
Dr. Sabrina Lin |
|
10/29/2010 |
Assessing Exposure to Nicotine and Tobacco Carcinogens - Recent Applications in Clinical Research |
Dr. Peyton Jacob |
- UCR Symposium on Tobacco-Related Disease Research 11:30am-12:00pm
|
10/29/2010 |
Differentiation of Human Germ Cells from Pluripotent Stem Cells |
Dr. Renee Reijo Pera |
- UCR Symposium on Tobacco-Related Disease Research 11:00am-11:30am
|
10/22/2010 |
Electron Microscope Tomography in Biological Research |
Dr. Albert Lawrence |
|
10/15/2010 |
Segmentation of Low-contrast Images |
Dr. Bir Bhanu |
|
10/08/2010 |
Computational challenges in barley genomics |
Dr. Stefano Lonardi |
|
10/01/2010 |
Rational drug design: the compstatin paradigm |
Dr. Dimitrios Morikis |
|
09/24/2010 |
A statistical approach for intensity loss compensation of confocal microscopy images |
Dr. Ninad Thakoor |
|
Seminars 2009-2010
Date |
Title |
Presenter |
Papers |
05/20/2010 |
Radon transform |
Katya Mkrtchyan and Aaron Schooley | |
05/13/2010 |
Automated Tracking of Stem Cell Lineages of Arabidopsis Shoot Apex Using Local Graph Matching |
Min Liu and Anirban Chakraborty | |
05/06/2010 |
Segmentation of Complex Nucleus Configurations in Biology Images |
Ben Guan and Erica Freeman | |
04/29/2010 |
Use of Video Bioinformatics in Animal Behavior Studies |
Anthony Bianchi and Melissa Yoder | |
04/22/2010 |
Segmentation of center brains and optic lobes in 3D confocal images of adult fruit fly brains |
Virginia Donovan and Ben Sanders | |
04/15/2010 |
Image Retrieval for Highly Similar Objects |
Anthony Bianchi | |
03/11/2010 |
Recap Questions & Answers |
Presented by All | |
03/04/2010 |
Nonnegative Mixed-Norm Precondition for Microscopy Image Segmentation (Continue) |
Ben Guan | |
02/25/2010 |
Nonnegative Mixed-Norm Precondition for Microscopy Image Segmentation |
Ben Guan | |
02/18/2010 |
Visualizing Signals Moving in Cells |
Virginia Donovan | |
02/11/2010 |
Tracking in Molecular Bioimaging |
Anthony Bianchi | |
02/04/2010 |
Mitosis Through the Microscope: Advances in Seeing Inside Live Dividing Cells |
Melissa Yoder | |
01/28/2010 |
Deconvolution Methods for 3-D Fluorescence Microscopy Images |
Ben Sanders | |
01/21/2010 |
Color Revolution of Bioimaging Part 2 |
Ivann Martinez | |
01/14/2010 |
Color Revolution of Bioimaging Part 1 |
Albert Cruz |
|
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|
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